IL_5LI0_007

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGAACUG*CUUAGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_007 not in the Motif Atlas

Geometric match to IL_4WF9_008

Geometric discrepancy: 0.148

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84694.2

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5LI0|1|A|G|190
5LI0|1|A|A|191
5LI0|1|A|G|192
5LI0|1|A|A|193
5LI0|1|A|A|194
5LI0|1|A|C|195
5LI0|1|A|U|196
5LI0|1|A|G|197
*
5LI0|1|A|C|204
5LI0|1|A|U|205
5LI0|1|A|U|206
5LI0|1|A|A|207
5LI0|1|A|G|208
5LI0|1|A|U|209
5LI0|1|A|A|210
5LI0|1|A|C|211
5LI0|1|A|C|212

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain 6

50S ribosomal protein L34

Chain O

50S ribosomal protein L15