IL_5LI0_066
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCGG*CG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LI0_066 not in the Motif Atlas
- Homologous match to IL_7A0S_066
- Geometric discrepancy: 0.1233
- The information below is about IL_7A0S_066
- Detailed Annotation
- Minor groove platform, major groove intercalation
- Broad Annotation
- Minor groove platform, major groove intercalation
- Motif group
- IL_95583.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
5LI0|1|A|C|1864
5LI0|1|A|C|1865
5LI0|1|A|G|1866
5LI0|1|A|G|1867
*
5LI0|1|A|C|1929
5LI0|1|A|G|1930
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: