IL_5LI0_139
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGAAAGCC*GAGGG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LI0_139 not in the Motif Atlas
- Homologous match to IL_5J7L_030
- Geometric discrepancy: 0.2108
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5LI0|1|a|U|613
5LI0|1|a|G|614
5LI0|1|a|A|615
5LI0|1|a|A|616
5LI0|1|a|A|617
5LI0|1|a|G|618
5LI0|1|a|C|619
5LI0|1|a|C|620
*
5LI0|1|a|G|636
5LI0|1|a|A|637
5LI0|1|a|G|638
5LI0|1|a|G|639
5LI0|1|a|G|640
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain h
- 30S ribosomal protein S8
- Chain p
- 30S ribosomal protein S16
Coloring options: