3D structure

PDB id
5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UGUAG*CGCAGAGA
Length
13 nucleotides
Bulged bases
5LI0|1|a|A|710
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LI0_143 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.2061
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

5LI0|1|a|U|692
5LI0|1|a|G|693
5LI0|1|a|U|694
5LI0|1|a|A|695
5LI0|1|a|G|696
*
5LI0|1|a|C|707
5LI0|1|a|G|708
5LI0|1|a|C|709
5LI0|1|a|A|710
5LI0|1|a|G|711
5LI0|1|a|A|712
5LI0|1|a|G|713
5LI0|1|a|A|714

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain k
30S ribosomal protein S11

Coloring options:


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