IL_5LI0_164

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_164 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1764

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5LI0|1|a|C|1314
5LI0|1|a|G|1315
5LI0|1|a|G|1316
5LI0|1|a|A|1317
5LI0|1|a|U|1318
5LI0|1|a|U|1319
*
5LI0|1|a|A|1340
5LI0|1|a|U|1341
5LI0|1|a|G|1342
5LI0|1|a|A|1343
5LI0|1|a|A|1344
5LI0|1|a|G|1345

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13