IL_5LJ3_006

3D structure

PDB id

5LJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the core of the yeast spliceosome immediately after branching

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCC*GA

Length

5 nucleotides

Bulged bases

5LJ3|1|V|C|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57598.1

Basepair signature

cWW-cWW

Number of instances in this motif group

400

Unit IDs

5LJ3|1|V|U|65
5LJ3|1|V|C|66
5LJ3|1|V|C|67
*
5LJ3|1|V|G|81
5LJ3|1|V|A|82

Current chains

Chain V

U6 snRNA (small nuclear RNA)

Nearby chains

Chain A

Pre-mRNA-splicing factor 8

Chain E

Exon 1 (5' exon) of UBC4 pre-mRNA

Chain I

Intron of UBC4 pre-mRNA

Chain J

PRP46

Chain K

Pre-mRNA-processing protein 45

Chain N

Pre-mRNA-splicing factor SLT11

Chain O

CEF1

Chain P

CWC15

Chain S

CLF1