IL_5LKS_021

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGC*GGCGG

Length

9 nucleotides

Bulged bases

5LKS|1|L5|G|1288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_021 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.2681

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5LKS|1|L5|C|706
5LKS|1|L5|C|707
5LKS|1|L5|G|708
5LKS|1|L5|C|709
*
5LKS|1|L5|G|1287
5LKS|1|L5|G|1288
5LKS|1|L5|C|1289
5LKS|1|L5|G|1290
5LKS|1|L5|G|1291

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Lf

60S ribosomal protein L35a