IL_5LKS_028

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_028 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3093

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5LKS|1|L5|G|1425
5LKS|1|L5|G|1426
5LKS|1|L5|A|1427
5LKS|1|L5|U|1428
5LKS|1|L5|C|1429
*
5LKS|1|L5|G|1455
5LKS|1|L5|C|1456
5LKS|1|L5|G|1457
5LKS|1|L5|C|1458
5LKS|1|L5|A|1459
5LKS|1|L5|C|1460

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain Lb

Ribosomal protein L29, isoform CRA_a