IL_5LKS_030

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCC*GGAG

Length

7 nucleotides

Bulged bases

5LKS|1|L5|A|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_030 not in the Motif Atlas

Geometric match to IL_5E81_376

Geometric discrepancy: 0.3243

The information below is about IL_5E81_376

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

5LKS|1|L5|C|1467
5LKS|1|L5|C|1468
5LKS|1|L5|C|1469
*
5LKS|1|L5|G|1495
5LKS|1|L5|G|1496
5LKS|1|L5|A|1497
5LKS|1|L5|G|1498

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a

Chain Lb

Ribosomal protein L29, isoform CRA_a