IL_5LKS_063

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGC*GUAAAC

Length

10 nucleotides

Bulged bases

5LKS|1|L5|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_063 not in the Motif Atlas

Geometric match to IL_7A0S_102

Geometric discrepancy: 0.3361

The information below is about IL_7A0S_102

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform with intercalation

Motif group

IL_58502.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

5LKS|1|L5|G|3703
5LKS|1|L5|U|3704
5LKS|1|L5|G|3705
5LKS|1|L5|C|3706
*
5LKS|1|L5|G|3744
5LKS|1|L5|U|3745
5LKS|1|L5|A|3746
5LKS|1|L5|A|3747
5LKS|1|L5|A|3748
5LKS|1|L5|C|3749

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain S2

Small subunit ribosomal RNA; SSU rRNA