3D structure

PDB id
5LKS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure-function insights reveal the human ribosome as a cancer target for antibiotics
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GACCUU*AAGC
Length
10 nucleotides
Bulged bases
5LKS|1|L5|C|4349
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LKS_073 not in the Motif Atlas
Geometric match to IL_1HYS_004
Geometric discrepancy: 0.3976
The information below is about IL_1HYS_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_64231.5
Basepair signature
cWW-cWW-L-R-L-cWW
Number of instances in this motif group
11

Unit IDs

5LKS|1|L5|G|4347
5LKS|1|L5|A|4348
5LKS|1|L5|C|4349
5LKS|1|L5|C|4350
5LKS|1|L5|U|4351
5LKS|1|L5|U|4352
*
5LKS|1|L5|A|4362
5LKS|1|L5|A|4363
5LKS|1|L5|G|4364
5LKS|1|L5|C|4365

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LL
60S ribosomal protein L13
Chain LQ
60S ribosomal protein L18
Chain La
60S ribosomal protein L27a
Chain Lo
60S ribosomal protein L36a

Coloring options:


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