IL_5LKS_088

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUG*CAAUG

Length

8 nucleotides

Bulged bases

5LKS|1|L5|A|4656, 5LKS|1|L5|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_088 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.2942

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5LKS|1|L5|U|4641
5LKS|1|L5|U|4642
5LKS|1|L5|G|4643
*
5LKS|1|L5|C|4654
5LKS|1|L5|A|4655
5LKS|1|L5|A|4656
5LKS|1|L5|U|4657
5LKS|1|L5|G|4658

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31