IL_5LKS_113

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGGUU*GAA

Length

8 nucleotides

Bulged bases

5LKS|1|S2|G|113, 5LKS|1|S2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_113 not in the Motif Atlas

Geometric match to IL_5M0H_002

Geometric discrepancy: 0.2715

The information below is about IL_5M0H_002

Detailed Annotation

Multiple bulged bases, near cWW

Broad Annotation

Multiple bulged bases, near cWW

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

5LKS|1|S2|U|112
5LKS|1|S2|G|113
5LKS|1|S2|G|114
5LKS|1|S2|U|115
5LKS|1|S2|U|116
*
5LKS|1|S2|G|347
5LKS|1|S2|A|348
5LKS|1|S2|A|349

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11