IL_5LKS_159

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAGU*ACUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_159 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3907

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

5LKS|1|S2|U|1729
5LKS|1|S2|U|1730
5LKS|1|S2|A|1731
5LKS|1|S2|G|1732
5LKS|1|S2|U|1733
*
5LKS|1|S2|A|1801
5LKS|1|S2|C|1802
5LKS|1|S2|U|1803
5LKS|1|S2|U|1804
5LKS|1|S2|G|1805

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LV

60S ribosomal protein L23

Chain SI

40S ribosomal protein S8