IL_5LKS_193
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUAGUAGC*GCGAAAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LKS_193 not in the Motif Atlas
- Geometric match to IL_4V9F_012
- Geometric discrepancy: 0.2827
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
5LKS|1|L5|G|2358
5LKS|1|L5|U|2359
5LKS|1|L5|A|2360
5LKS|1|L5|G|2361
5LKS|1|L5|U|2362
5LKS|1|L5|A|2363
5LKS|1|L5|G|2364
5LKS|1|L5|C|2365
*
5LKS|1|L5|G|3857
5LKS|1|L5|C|3858
5LKS|1|L5|G|3859
5LKS|1|L5|A|3860
5LKS|1|L5|A|3861
5LKS|1|L5|A|3862
5LKS|1|L5|C|3863
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LP
- 60S ribosomal protein L17
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