IL_5LKS_233
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGU*ACAG
- Length
- 7 nucleotides
- Bulged bases
- 5LKS|1|S2|A|1489
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LKS_233 not in the Motif Atlas
- Geometric match to IL_3GM7_006
- Geometric discrepancy: 0.2604
- The information below is about IL_3GM7_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 213
Unit IDs
5LKS|1|S2|C|1337
5LKS|1|S2|G|1338
5LKS|1|S2|U|1339
*
5LKS|1|S2|A|1487
5LKS|1|S2|C|1488
5LKS|1|S2|A|1489
5LKS|1|S2|G|1490
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SD
- 40S ribosomal protein S3
- Chain SQ
- 40S ribosomal protein S16
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
Coloring options: