IL_5LKS_273

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACCGU*ACAGGUU

Length

13 nucleotides

Bulged bases

5LKS|1|L5|A|4548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_273 not in the Motif Atlas

Geometric match to IL_8SSW_003

Geometric discrepancy: 0.3892

The information below is about IL_8SSW_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5LKS|1|L5|G|4534
5LKS|1|L5|A|4535
5LKS|1|L5|C|4536
5LKS|1|L5|C|4537
5LKS|1|L5|G|4538
5LKS|1|L5|U|4539
*
5LKS|1|L5|A|4546
5LKS|1|L5|C|4547
5LKS|1|L5|A|4548
5LKS|1|L5|G|4549
5LKS|1|L5|G|4550
5LKS|1|L5|U|4551
5LKS|1|L5|U|4552

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LI

60S ribosomal protein L10-like