IL_5LL6_020

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

5LL6|1|2|U|313, 5LL6|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LL6_020 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1722

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

5LL6|1|2|U|311
5LL6|1|2|A|312
5LL6|1|2|U|313
5LL6|1|2|C|314
5LL6|1|2|A|315
5LL6|1|2|A|316
*
5LL6|1|2|U|348
5LL6|1|2|U|349
5LL6|1|2|U|350
5LL6|1|2|C|351
5LL6|1|2|A|352
5LL6|1|2|A|353
5LL6|1|2|C|354
5LL6|1|2|G|355

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain V

40S ribosomal protein S8-A

Chain X

40S ribosomal protein S11-A

Chain c

40S ribosomal protein S23-A