IL_5LL6_034

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

5LL6|1|2|A|579, 5LL6|1|2|U|581, 5LL6|1|2|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LL6_034 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1947

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5LL6|1|2|G|562
5LL6|1|2|U|563
5LL6|1|2|G|564
5LL6|1|2|C|565
5LL6|1|2|C|566
5LL6|1|2|A|567
5LL6|1|2|G|568
*
5LL6|1|2|C|575
5LL6|1|2|G|576
5LL6|1|2|G|577
5LL6|1|2|U|578
5LL6|1|2|A|579
5LL6|1|2|A|580
5LL6|1|2|U|581
5LL6|1|2|U|582
5LL6|1|2|C|583

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A