IL_5LL6_049

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LL6_049 not in the Motif Atlas

Geometric match to IL_7A0S_049

Geometric discrepancy: 0.2387

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5LL6|1|2|C|990
5LL6|1|2|G|991
5LL6|1|2|A|992
5LL6|1|2|A|993
5LL6|1|2|G|994
*
5LL6|1|2|C|1010
5LL6|1|2|G|1011
5LL6|1|2|U|1012
5LL6|1|2|A|1013
5LL6|1|2|G|1014

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Z

40S ribosomal protein S14-A

Chain e

40S ribosomal protein S26-A