IL_5LMR_029

3D structure

PDB id

5LMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.45 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

5LMR|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMR_029 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1132

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5LMR|1|A|G|662
5LMR|1|A|A|663
5LMR|1|A|G|664
5LMR|1|A|A|665
5LMR|1|A|G|666
*
5LMR|1|A|U|740
5LMR|1|A|G|741
5LMR|1|A|G|742
5LMR|1|A|U|743

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S6

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18