3D structure

PDB id
5LMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.45 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LMR_034 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.1081
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

5LMR|1|A|G|887
5LMR|1|A|G|888
5LMR|1|A|A|889
5LMR|1|A|G|890
5LMR|1|A|U|891
5LMR|1|A|A|892
5LMR|1|A|C|893
5LMR|1|A|G|894
*
5LMR|1|A|U|905
5LMR|1|A|G|906
5LMR|1|A|A|907
5LMR|1|A|A|908
5LMR|1|A|A|909
5LMR|1|A|C|910

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12

Coloring options:


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