IL_5LMV_019

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMV_019 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.1425

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5LMV|1|A|G|450
5LMV|1|A|A|451
5LMV|1|A|A|452
5LMV|1|A|A|453
5LMV|1|A|C|454
5LMV|1|A|C|455
*
5LMV|1|A|G|476
5LMV|1|A|A|477
5LMV|1|A|C|479
5LMV|1|A|U|480
5LMV|1|A|G|481
5LMV|1|A|A|482
5LMV|1|A|C|483

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16