3D structure

PDB id
5LMV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.9 Å

Loop

Sequence
UACAAAG*CAAAAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LMV_046 not in the Motif Atlas
Homologous match to IL_4LFB_051
Geometric discrepancy: 0.1244
The information below is about IL_4LFB_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.2
Basepair signature
cWW-L-R-tWH-L-R-L-tWW-cWW
Number of instances in this motif group
2

Unit IDs

5LMV|1|A|U|1247
5LMV|1|A|A|1248
5LMV|1|A|C|1249
5LMV|1|A|A|1250
5LMV|1|A|A|1251
5LMV|1|A|A|1252
5LMV|1|A|G|1253
*
5LMV|1|A|C|1284
5LMV|1|A|A|1285
5LMV|1|A|A|1286
5LMV|1|A|A|1287
5LMV|1|A|A|1288
5LMV|1|A|A|1289
5LMV|1|A|G|1290

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain C
30S ribosomal protein S3
Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14 type Z
Chain V
30S ribosomal protein Thx

Coloring options:


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