IL_5LMV_048

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMV_048 not in the Motif Atlas

Geometric match to IL_4V88_461

Geometric discrepancy: 0.3646

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5LMV|1|A|C|1259
5LMV|1|A|C|1260
5LMV|1|A|A|1261
5LMV|1|A|C|1262
*
5LMV|1|A|G|1273
5LMV|1|A|G|1274
5LMV|1|A|A|1275
5LMV|1|A|G|1276

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain V

30S ribosomal protein Thx