IL_5LYB_038
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LYB_038 not in the Motif Atlas
- Homologous match to IL_8C3A_041
- Geometric discrepancy: 0.097
- The information below is about IL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5LYB|1|1|G|991
5LYB|1|1|A|992
5LYB|1|1|G|993
5LYB|1|1|G|994
5LYB|1|1|U|995
5LYB|1|1|A|996
5LYB|1|1|A|997
*
5LYB|1|1|U|1052
5LYB|1|1|A|1053
5LYB|1|1|A|1054
5LYB|1|1|A|1055
5LYB|1|1|U|1056
5LYB|1|1|A|1057
5LYB|1|1|U|1058
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain L7
- 60S ribosomal protein L7-A
- Chain M0
- 60S ribosomal protein L10
- Chain N1
- 60S ribosomal protein L21-A
Coloring options: