IL_8C3A_041

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGGUAA*UAAAUAU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93830.3

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8C3A|1|1|G|987
8C3A|1|1|A|988
8C3A|1|1|G|989
8C3A|1|1|G|990
8C3A|1|1|U|991
8C3A|1|1|A|992
8C3A|1|1|A|993
*
8C3A|1|1|U|1048
8C3A|1|1|A|1049
8C3A|1|1|A|1050
8C3A|1|1|A|1051
8C3A|1|1|U|1052
8C3A|1|1|A|1053
8C3A|1|1|U|1054

Current chains

Chain 1

25S

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain 3

5S ribosomal RNA; 5S rRNA

Chain o

60S ribosomal protein L7-A

Chain r

60S ribosomal protein L10