IL_5LYB_043

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUUCCG*UGAC

Length

10 nucleotides

Bulged bases

5LYB|1|1|C|1016, 5LYB|1|1|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_043 not in the Motif Atlas

Homologous match to IL_5TBW_043

Geometric discrepancy: 0.1058

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

5LYB|1|1|G|1013
5LYB|1|1|U|1014
5LYB|1|1|U|1015
5LYB|1|1|C|1016
5LYB|1|1|C|1017
5LYB|1|1|G|1018
*
5LYB|1|1|U|1034
5LYB|1|1|G|1035
5LYB|1|1|A|1036
5LYB|1|1|C|1037

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L5

60S ribosomal protein L5

Chain M1

60S ribosomal protein L11-B

Chain SM

Suppressor protein STM1,Suppressor protein STM1,Suppressor protein STM1