IL_5LYB_055

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

5LYB|1|1|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_055 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.5657

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.2

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

5LYB|1|1|G|1234
5LYB|1|1|U|1235
5LYB|1|1|G|1236
5LYB|1|1|G|1237
5LYB|1|1|C|1238
*
5LYB|1|1|G|1250
5LYB|1|1|A|1251
5LYB|1|1|A|1252
5LYB|1|1|U|1253
5LYB|1|1|C|1254

Current chains

Chain 1

25S rRNA

Nearby chains