IL_5LYB_085

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

5LYB|1|1|A|2242, 5LYB|1|1|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_085 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.0643

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5LYB|1|1|U|2200
5LYB|1|1|G|2201
*
5LYB|1|1|U|2241
5LYB|1|1|A|2242
5LYB|1|1|A|2243
5LYB|1|1|A|2244

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L2

60S ribosomal protein L2-A