IL_5LYB_131

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

5LYB|1|1|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_131 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.0754

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5LYB|1|1|G|3328
5LYB|1|1|U|3329
5LYB|1|1|A|3330
*
5LYB|1|1|U|3373
5LYB|1|1|U|3374
5LYB|1|1|A|3375
5LYB|1|1|A|3376
5LYB|1|1|G|3377
5LYB|1|1|C|3378

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain N4

60S ribosomal protein L24-A

Chain O1

60S ribosomal protein L31-A