IL_5LYB_160

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCAAUC*GGAG

Length

10 nucleotides

Bulged bases

5LYB|1|2|G|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_160 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.0628

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5LYB|1|2|C|443
5LYB|1|2|C|444
5LYB|1|2|A|445
5LYB|1|2|A|446
5LYB|1|2|U|447
5LYB|1|2|C|448
*
5LYB|1|2|G|458
5LYB|1|2|G|459
5LYB|1|2|A|460
5LYB|1|2|G|461

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A