IL_5LYB_166

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

5LYB|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_166 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.0878

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

5LYB|1|2|G|616
5LYB|1|2|U|617
5LYB|1|2|U|618
5LYB|1|2|A|619
5LYB|1|2|A|620
5LYB|1|2|A|621
5LYB|1|2|A|622
*
5LYB|1|2|U|1104
5LYB|1|2|C|1105

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain D6

40S ribosomal protein S26-B