IL_5LYB_189

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

5LYB|1|2|C|1158, 5LYB|1|2|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_189 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.1386

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

5LYB|1|2|A|1157
5LYB|1|2|C|1158
5LYB|1|2|C|1159
5LYB|1|2|A|1160
*
5LYB|1|2|U|1617
5LYB|1|2|C|1618
5LYB|1|2|C|1619
5LYB|1|2|C|1620
5LYB|1|2|U|1621

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain D8

40S ribosomal protein S28-A

Chain S5

40S ribosomal protein S5