IL_5LYB_212
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LYB_212 not in the Motif Atlas
- Geometric match to IL_4V88_466
- Geometric discrepancy: 0.1145
- The information below is about IL_4V88_466
- Detailed Annotation
- Non canonical cWW and near pair
- Broad Annotation
- Non canonical cWW and near pair
- Motif group
- IL_90170.1
- Basepair signature
- cWW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5LYB|1|2|C|1644
5LYB|1|2|G|1645
5LYB|1|2|C|1646
5LYB|1|2|U|1647
*
5LYB|1|2|A|1753
5LYB|1|2|A|1754
5LYB|1|2|A|1755
5LYB|1|2|A|1756||A
5LYB|1|2|G|1757
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain D3
- 40S ribosomal protein S23-A
- Chain E0
- 40S ribosomal protein S30-A
- Chain Q1
- 60S ribosomal protein L41-A
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