IL_5LYB_283
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 5LYB|1|5|U|1191, 5LYB|1|5|C|1192, 5LYB|1|5|C|1316, 5LYB|1|5|A|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LYB_283 not in the Motif Atlas
- Homologous match to IL_5TBW_051
- Geometric discrepancy: 0.0763
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5LYB|1|5|C|1187
5LYB|1|5|U|1188
5LYB|1|5|C|1189
5LYB|1|5|A|1190
5LYB|1|5|U|1191
5LYB|1|5|C|1192
5LYB|1|5|A|1193
5LYB|1|5|G|1194
*
5LYB|1|5|C|1314
5LYB|1|5|U|1315
5LYB|1|5|C|1316
5LYB|1|5|A|1317
5LYB|1|5|A|1318
5LYB|1|5|G|1319
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain l9
- 60S ribosomal protein L9-A
- Chain m4
- 60S ribosomal protein L14-A
- Chain m6
- 60S ribosomal protein L16-A
- Chain n0
- 60S ribosomal protein L20-A
- Chain q0
- Ubiquitin-60S ribosomal protein L40
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