IL_5LZB_031

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGG*UACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZB_031 not in the Motif Atlas

Geometric match to IL_8VTW_044

Geometric discrepancy: 0.273

The information below is about IL_8VTW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

5LZB|1|A|G|879
5LZB|1|A|G|880
5LZB|1|A|G|881
*
5LZB|1|A|U|895
5LZB|1|A|A|896
5LZB|1|A|C|897
5LZB|1|A|C|898

Current chains

Chain A

23S ribosomal RNA

Nearby chains