IL_5LZB_045

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5LZB|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZB_045 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1472

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5LZB|1|A|C|1208
5LZB|1|A|U|1209
5LZB|1|A|G|1210
5LZB|1|A|C|1211
5LZB|1|A|G|1212
5LZB|1|A|A|1213
5LZB|1|A|A|1214
5LZB|1|A|G|1215
*
5LZB|1|A|U|1234
5LZB|1|A|G|1235
5LZB|1|A|G|1236
5LZB|1|A|A|1237
5LZB|1|A|G|1238

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20