IL_5LZB_068

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

5LZB|1|A|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZB_068 not in the Motif Atlas

Geometric match to IL_5J7L_311

Geometric discrepancy: 0.3143

The information below is about IL_5J7L_311

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

5LZB|1|A|C|1727
5LZB|1|A|C|1728
*
5LZB|1|A|G|1731
5LZB|1|A|C|1732
5LZB|1|A|G|1733

Current chains

Chain A

23S ribosomal RNA

Nearby chains