IL_5LZB_099
3D structure
- PDB id
- 5LZB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UG*CAAG
- Length
- 6 nucleotides
- Bulged bases
- 5LZB|1|A|A|2542
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZB_099 not in the Motif Atlas
- Homologous match to IL_4WF9_097
- Geometric discrepancy: 0.1146
- The information below is about IL_4WF9_097
- Detailed Annotation
- Major groove platform with intercalation
- Broad Annotation
- Major groove platform
- Motif group
- IL_02555.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
5LZB|1|A|U|2522
5LZB|1|A|G|2523
*
5LZB|1|A|C|2540
5LZB|1|A|A|2541
5LZB|1|A|A|2542
5LZB|1|A|G|2543
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain J
- 50S ribosomal protein L13
Coloring options: