IL_5LZB_129

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5LZB|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZB_129 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1353

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5LZB|1|a|G|147
5LZB|1|a|G|148
5LZB|1|a|A|149
5LZB|1|a|U|150
5LZB|1|a|A|151
5LZB|1|a|A|152
5LZB|1|a|C|153
*
5LZB|1|a|G|168
5LZB|1|a|C|169
5LZB|1|a|U|170
5LZB|1|a|A|171
5LZB|1|a|A|172
5LZB|1|a|U|173
5LZB|1|a|A|174
5LZB|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20