3D structure

PDB id
5LZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
5LZB|1|a|U|244, 5LZB|1|a|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZB_131 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.1483
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

5LZB|1|a|G|242
5LZB|1|a|A|243
5LZB|1|a|U|244
5LZB|1|a|U|245
5LZB|1|a|A|246
5LZB|1|a|G|247
*
5LZB|1|a|C|277
5LZB|1|a|G|278
5LZB|1|a|A|279
5LZB|1|a|C|280
5LZB|1|a|G|281
5LZB|1|a|A|282
5LZB|1|a|U|283
5LZB|1|a|C|284

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain l
30S ribosomal protein S12
Chain q
30S ribosomal protein S17

Coloring options:


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