IL_5LZB_178

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZB_178 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.1675

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

5LZB|1|a|G|1416
5LZB|1|a|G|1417
5LZB|1|a|A|1418
5LZB|1|a|G|1419
*
5LZB|1|a|U|1481
5LZB|1|a|G|1482
5LZB|1|a|A|1483
5LZB|1|a|C|1484

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA