IL_5LZB_186

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZB_186 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1279

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5LZB|1|A|U|1851
5LZB|1|A|U|1852
5LZB|1|A|A|1853
5LZB|1|A|A|1854
5LZB|1|A|U|1855
5LZB|1|A|U|1856
5LZB|1|A|G|1857
5LZB|1|A|A|1858
5LZB|1|A|U|1859
5LZB|1|A|G|1860
*
5LZB|1|A|U|1882
5LZB|1|A|U|1883
5LZB|1|A|G|1884
5LZB|1|A|A|1885
5LZB|1|A|U|1886
5LZB|1|A|C|1887
5LZB|1|A|G|1888
5LZB|1|A|A|1889
5LZB|1|A|A|1890
5LZB|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains