IL_5LZD_070

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5LZD|1|A|A|1801, 5LZD|1|A|C|1816, 5LZD|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZD_070 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.084

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5LZD|1|A|U|1798
5LZD|1|A|G|1799
5LZD|1|A|C|1800
5LZD|1|A|A|1801
5LZD|1|A|A|1802
5LZD|1|A|A|1803
5LZD|1|A|C|1804
*
5LZD|1|A|G|1813
5LZD|1|A|G|1814
5LZD|1|A|A|1815
5LZD|1|A|C|1816
5LZD|1|A|G|1817
5LZD|1|A|U|1818
5LZD|1|A|A|1819
5LZD|1|A|U|1820
5LZD|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA