IL_5LZD_103

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

5LZD|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZD_103 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0924

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5LZD|1|A|C|2636
5LZD|1|A|U|2637
5LZD|1|A|G|2638
5LZD|1|A|A|2639
5LZD|1|A|G|2640
*
5LZD|1|A|C|2774
5LZD|1|A|G|2775
5LZD|1|A|A|2776
5LZD|1|A|G|2777
5LZD|1|A|A|2778
5LZD|1|A|U|2779
5LZD|1|A|G|2780
5LZD|1|A|A|2781
5LZD|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13