IL_5LZE_001

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZE_001 not in the Motif Atlas

Geometric match to IL_7A0S_001

Geometric discrepancy: 0.0889

The information below is about IL_7A0S_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5LZE|1|A|G|24
5LZE|1|A|U|25
5LZE|1|A|G|26
5LZE|1|A|G|27
5LZE|1|A|A|28
5LZE|1|A|U|29
5LZE|1|A|G|30
*
5LZE|1|A|C|510
5LZE|1|A|U|511
5LZE|1|A|G|512
5LZE|1|A|A|513
5LZE|1|A|A|514
5LZE|1|A|A|515
5LZE|1|A|C|516

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22