IL_5LZE_007
3D structure
- PDB id
- 5LZE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCAGUAG*CGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LZE_007 not in the Motif Atlas
- Homologous match to IL_5J7L_251
- Geometric discrepancy: 0.0913
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
5LZE|1|A|C|239
5LZE|1|A|C|240
5LZE|1|A|A|241
5LZE|1|A|G|242
5LZE|1|A|U|243
5LZE|1|A|A|244
5LZE|1|A|G|245
*
5LZE|1|A|C|253
5LZE|1|A|G|254
5LZE|1|A|A|255
5LZE|1|A|A|256
5LZE|1|A|C|257
5LZE|1|A|G|258
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain L
- 50S ribosomal protein L15
Coloring options: