IL_5LZE_016

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5LZE|1|A|G|801, 5LZE|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZE_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0924

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5LZE|1|A|G|674
5LZE|1|A|A|675
5LZE|1|A|A|676
5LZE|1|A|A|677
5LZE|1|A|C|678
*
5LZE|1|A|G|799
5LZE|1|A|A|800
5LZE|1|A|G|801
5LZE|1|A|A|802
5LZE|1|A|U|803
5LZE|1|A|A|804
5LZE|1|A|G|805
5LZE|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15