IL_5LZE_026

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZE_026 not in the Motif Atlas

Geometric match to IL_5J7L_270

Geometric discrepancy: 0.0888

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5LZE|1|A|G|856
5LZE|1|A|G|857
5LZE|1|A|G|858
5LZE|1|A|G|859
5LZE|1|A|U|860
5LZE|1|A|A|861
5LZE|1|A|G|862
*
5LZE|1|A|C|915
5LZE|1|A|G|916
5LZE|1|A|A|917
5LZE|1|A|A|918
5LZE|1|A|U|919
5LZE|1|A|A|920
5LZE|1|A|C|921

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27

Chain Z

50S ribosomal protein L30